May be it'll be possible to write small standalone software using ffmpeg or similar library to convert captured footage to proper format?
yes thats good idea
like batch avs script with wild cards or .bat
Actually "Khaver" on HV20 forums already has a batch utility GUI made with PDF instructions it should be easy enough for most users . Avisynth, ffmpeg are backends
http://www.hv20.com/showthread.php?25044-Batch-Intermediate-Creation-Utilities
(go to end of thread because newer versions there)