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de-interlacing can create certain "artifacts" that degrade the image quality.
but that's just an example. it's good to know what you're shooting, and what it's being shot for, when making a determination about frame rate.
The only time I'd ever shoot interlaced is if a broadcaster absolutely insisted on it for a paying job. I think the whole concept of interlacing is outdated in an all-digital era where nobody is watching CRTs anymore.
If there was even a remote chance it would go to SD - DVD and/or Blu-Ray then I would shoot 1080 60i. If for the web, then 720 30p or 60p. But it may not really matter that much which format as most have work-a-rounds. Here is a link to a video that I shot 1080i and de-interlaced via TMPGE4 for the web. I think it deinterlaced fairly well as flowing water is one of the best subjects to test. http://vimeo.com/6741349