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In fact your Pro Res files are .MOV.
A lot of people on this forum own Canon HDSLRs, and those who responded were justified in their need for clarification. The extension .mov indicates a Quicktime file. There are tons of different "codecs" that can be used to make a .mov file, and it is therefore quite vague to simply say .mov or Quicktime file in the world of non linear editing. FCP is a Quicktime based editing software program. However, the .mov files imported directly from your Canon HDSLR won't perform well in FCP because the codec used in those particular .mov files (Quicktimes) is H.264. This is a codec that is more appropriate for delivery and not editing. When you transcode the H.264 files into ProRes, you are essentially expanding a highly compressed Quicktime file into a larger, more "elaborate" file that is more suitable for editing. So, to answer your question- .mov is ideal for editing in FCP; it just has to be a .mov file with an appropriate codec (which ProRes certainly is and H.264 is not). Hope that helped.