24p and 24p Advanced...same timeline

I know this topic has come up a million times and I did a search before I posted this and didnt find a clear answer.

I have a project I am working on now. All of my daytime footage was shot on 24P Advanced however all of my nighttime footage and its a lot was shot on normal 24P. I set my timeline up to remove the pulldown in 23.98. I have to render out all the night footage which is not a big deal before I can play it back.

The problem I am now noticing is that all the night b-roll has an unwanted strobe like effect to it when it plays. I only notice this when I watch it on an external monitor. On my Laptop screen, I can tell the footage needs to be de-interlaced but the strobey look is not present on the laptop. I can see the lines on shots with some sort of motion.

When I did my search here on DVXuser, I came across a thread that someone said to use Cinema Tools to correct the problem of mixing 24p and 24PA footage in the same timeline. Being as though I have never used Cinema Tools, how do I use it to get the results I want?

Also since I am still shooting with the original DVX100 camera, I have to use that offset tool to keep my audio in sync. I havent shot on 24PA in such a long while that I havent used that tool in a long time. Do I select all clips in timeline then click on that tool to fix anything that might be out of wack? I can't remember! LOL!
 
ok cool...my only problem is that I have already begun editing...I am 6 minutes into the project. I wonder if I could select those clips in the timeline that need to be treated and export them to Cinema tools then replace them back in the timeline...I captured all footage with 23.98 pulldown removal set up though.
 
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